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User’s Organs Identification Interface

User’s Organs Identification Interface

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User’s Organs Identification Interface

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Scan2Mesh graphical interface is divided into four parts:

•a menu bar
•a list of images
•a visualization area
•an organs menu

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Scan2Mesh user’s main interface

Menu Bar

You can choose the following options from the Menu bar:

File

•New project: load a list of image files and find information about their characteristics (slices thickness, pixels dimensions)
•Quit: quit Scan2Mesh

Project

•Load project : load a project file containing a list of images and characteristics, organs, etc.
•Save project : save a project file containing a list of images and characteristics, organs, etc.
•Scanner values : find the slices' thicknesses and the pixel dimensions

Help

•About : display Scan2Mesh version

List of Images

From the Images list, select the image to be displayed in the visualization area.

Visualization Area

Displays the image selected in the image list and interacts with you to allow region selection or hand-drawing.

Activate the Display regions check box to display identified regions by automatic methods.

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Display regions

Organs Menu

Organs List

Scroll through the list to select and display organs.

New Organ

Create a new organ.

Erase Organ

Erase the selected organ.

Mesh Organ

Show the meshing interface.

Edit Organ

Show the edition sub-menu.

Change color

Change the display color of selected organs.

Edition Sub-Menu

Save

Save the modifications performed on the selected organ.

Cancel

Cancel the modifications performed on the selected organ.

Rename

Rename the selected organ.

Erase on Current

Erase the organ’s contour on the displayed image.

Erase Upper

Erase the organ’s contour on all images above the displayed one.

Erase Lower

Erase the organ’s contour on all images below the displayed one.

By Hand

Display the By hand drawing menu:

•Draw: allows drawing on the displayed image (left-click)
•Erase: erase pixels on the displayed image (left-click)
•Fill: fill a closed contour drawn by hand
•Fill undo: undo last filling

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By-hand drawing sub-menu

Automatic

Display the Automatic segmentation menu:

•Thresholding: identify regions on the set of images by defining a threshold separating organs from everything else

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Thresholding sub-menu